The fastest algorithm to mine on NVIDIA is by far Skein. This fork of ccminer from Klaust is definitely the fastest build of ccminer I have found to mine Skein on NVIDIA CUDA.
The build attached here is pre-compiled to work with the Install NVIDIA Driver and CUDA on Ubuntu 16.04
#!/bin/bash mkdir klaust cd klaust wget https://github.com/KlausT/ccminer/archive/8.09.zip apt-get install -y unzip unzip 8.09.zip cd ccminer-8.09 apt-get install -y python3-dev echo 'add_compile_options(-std=c++11)' >> ./CMakeLists.txt ./autogen.sh ./configure make echo "Finished" exit
To buy a pre-compiled Dockerfile with this image check my selection of miner friendly Dockerfiles at https://docker.cryptoandcoffee.com